Software

The software developed within the group include:

Wasabi is a tool for visualisation and manipulation of rich MSAs and a graphical interface to command-line programs. Wasabi can be accessed at http://wasabiapp.org.

Séance is a community analysis pipeline for the 18S rRNA marker gene incorporating homopolymer modelling for clustering 454 data, phylogenetic placement and visualisation. The Séance homepage is at http://wasabiapp.org/software/seance.

Canopy is a tool for iterative co-estimation of the tree and MSA using a parallelised version of PRANK. The Canopy homepage is at http://wasabiapp.org/software/canopy.

PRANK is a probabilistic multiple alignment program for DNA, codon and amino-acid sequences. The PRANK homepage is at http://wasabiapp.org/software/prank.

PAGAN is a general-purpose method for sequence alignment and alignment extension. The PAGAN homepage is at http://wasabiapp.org/software/pagan.