Some of the research software developed in the group:

• Wasabi, visualisation of rich MSAs and graphical interface to command-line programs: http://wasabiapp.org.
• PRANK, phylogeny-aware alignment of DNA, codon and amino-acid sequences: https://ariloytynoja.github.io/prank-msa.
• PAGAN, phylogeny-aware sequence alignment and alignment extension: https://ariloytynoja.github.io/pagan-msa.
• FPA, alignment with template switching: https://github.com/ariloytynoja/fpa.
• Séance, community analysis of 18S rRNA marker gene data: https://github.com/ariloytynoja/seance.
• Canopy, iterative co-estimation of tree and MSA: https://github.com/ariloytynoja/canopy.
• Legacy code for ProAlign: https://github.com/ariloytynoja/ProAlign.