The software developed within the group include:
Wasabi is a tool for visualisation and manipulation of rich MSAs and a graphical interface to command-line programs. Wasabi can be accessed at http://wasabiapp.org.
Séance is a community analysis pipeline for the 18S rRNA marker gene incorporating homopolymer modelling for clustering 454 data, phylogenetic placement and visualisation. The Séance homepage is at http://wasabiapp.org/software/seance.
Canopy is a tool for iterative co-estimation of the tree and MSA using a parallelised version of PRANK. The Canopy homepage is at http://wasabiapp.org/software/canopy.
PRANK is a probabilistic multiple alignment program for DNA, codon and amino-acid sequences. The PRANK homepage is at http://wasabiapp.org/software/prank.
PAGAN is a general-purpose method for sequence alignment and alignment extension. The PAGAN homepage is at http://wasabiapp.org/software/pagan.
FPA is a progressive alignment algorithm with template switch events. The FPA code is available at https://github.com/ariloytynoja/fpa.