Research topic: Glutton - reference-based assembly of RNA-seq data

Research topic: Evolutionary genomics of Saimaa ringed seal

Research topic: Canopy -- parallelised, iterative search of optimal phylogeny and phylogeny-aware MSA

Research topic: Séance -- reference-based phylogenetic analysis for 18S rRNA studies

Research topic: Wasabi -- a web–based platform for evolutionary sequence analysis

Letter: Simple chained guide trees give poorer multiple sequence alignments than inferred trees in simulation and phylogenetic benchmarks

Publication: Séance - reference-based phylogenetic analysis for 18S rRNA studies

Publication: Accurate extension of multiple sequence alignments using a phylogeny-aware graph algorithm

Publication: Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

Publication: webPRANK: a phylogeny-aware multiple sequence aligner with interactive alignment browser

Publication: Phylogeny-aware gap placement prevents errors in sequence alignment and evolutionary analysis

Publication: Alignment Methods: Strategies, Challenges, Benchmarking, and Comparative Overview

Publication: A model of evolution and structure for multiple sequence alignment

Publication: An algorithm for progressive multiple alignment of sequences with insertions

Publication: Uniting alignments and trees