ProAlign

The source code can be found here and a jar-file here.

Description of the method: here and here.

Usage

java -jar proalign_0.5a0.jar

Compilation

tar xzf proalign_0.5a0.tar.gz
javac -Xlint:deprecation -Xlint:unchecked -d . *java
mkdir META-INF
cat > META-INF/MANIFEST.MF << EOF
Main-Class: proalign.ProAlign
EOF
jar cmf META-INF/MANIFEST.MF proalign.jar proalign/*class

This software is no more supported. Back to other software.